Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRC rs75265687 chr3:126199475 A/C 2.55E-8 523 39.23 38.53 6.3 KM Plot
KIRC rs75323103 chr6:2433202 G/A 1.48E-7 523 39.62 41 12.25 KM Plot
KIRC rs75377578 chr6:165377478 G/A 3.43E-5 518 39.38 44.57 15.83 KM Plot
KIRC rs75394324 chr4:16206297 G/A 3.2E-6 527 38.95 46.8 8.22 KM Plot
KIRC rs75479466 chr11:34961066 G/A 9.33E-13 525 40.58 32.23 3.48 KM Plot
KIRC rs75609495 chr11:34730058 T/G 1.03E-7 523 39.23 43 3.3 KM Plot
KIRC rs75632692 chr11:34773578 T/A 1.33E-7 524 40 36.92 3.3 KM Plot
KIRC rs7573357 chr2:67539680 G/A 1.9E-7 525 40.57 37.7 2.03 KM Plot
KIRC rs7585807 chr2:67669564 A/T 2.13E-7 527 2.03 39.53 39.47 KM Plot
KIRC rs7598374 chr2:2608702 C/T 3.11E-5 527 39.7 41.27 12.07 KM Plot
KIRC rs76081677 chr21:44303720 G/A 3.25E-13 523 42.75 32.42 3.37 KM Plot
KIRC rs76120566 chr4:123087303 C/G 8.53E-12 525 38.95 46.9 1.97 KM Plot
KIRC rs76190860 chr11:34769255 A/G 1.83E-7 516 40.57 38.05 3.3 KM Plot
KIRC rs7621785 chr3:48343708 T/C 3.51E-5 520 39.53 40.93 19.13 KM Plot
KIRC rs7624450 chr3:48350375 A/G 3.27E-5 523 39.62 41.27 19.13 KM Plot